PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g060250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 1329aa    MW: 148732 Da    PI: 7.4762
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g060250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003412401263223
                      EET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                      +C+   Cgk F+ + +L+ H+r+H
  Csa08g060250.1 1240 RCTheGCGKKFRAHKYLVLHQRVH 1263
                      588889****************99 PP

2zf-C2H211.40.00112991325123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      ykC+   Cg sF+  s++ rH r+  H
  Csa08g060250.1 1299 YKCKveGCGLSFRFVSDYSRHRRKtgH 1325
                      99*********************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-151555IPR003349JmjN domain
PROSITE profilePS5118314.161657IPR003349JmjN domain
PfamPF023757.3E-161750IPR003349JmjN domain
SMARTSM005584.1E-45264430IPR003347JmjC domain
PROSITE profilePS5118434.949264430IPR003347JmjC domain
SuperFamilySSF511976.04E-27275428No hitNo description
PfamPF023737.4E-38294413IPR003347JmjC domain
SMARTSM003555512161238IPR015880Zinc finger, C2H2-like
SMARTSM003550.05712391263IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.46412391268IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-812401268IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012411263IPR007087Zinc finger, C2H2
SuperFamilySSF576677.83E-1112551297No hitNo description
SMARTSM003550.00912691293IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.42412691298IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-1012691293IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012711293IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-812871321No hitNo description
Gene3DG3DSA:3.30.160.606.6E-1012941322IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.3312991325IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.28612991328IPR007087Zinc finger, C2H2
PROSITE patternPS00028013011325IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1329 aa     Download sequence    Send to blast
MGNVEIPNWL KALPLAPVFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKKYV  60
FHNLNKSLLK CPELVSDVDI SKVCKEDRAV FTTRQQELGQ TVKKTKGEKS KCVSQRSGVK  120
QVWQSGGVYT LEQFEAKSKT FYKSQLGTVK EVSPVVVEAL FWKAASEKPI YIEYANDVPG  180
SAFGEPEGHF RHFRHRKRRG RGFYQRKTEI NGPSGKNSEN SSPKVEKAPL ASTSLSSQGQ  240
GSSKQKSTDI LDEMEGTAGW KLSNSSWNLQ TIARSPGSVT RFMPDDIPGV TSPMVYIGML  300
FSWFAWHVED HELHSMNYLH TGSPKTWYAV PCDYALEFEE VIRKNSYGRN IDQLAALTQL  360
GEKTTLVSPE MIVASGIPCC RVVQNPGEFV VTFPRSYHVG FSHGFNCGEA ANFGTPQWLN  420
VAKEAAVRRA AMNYLPMLSH QQLLYLLTIV PRSFLPGGRS SRLRDRQREE REFLVKKAFV  480
EDILNENKNL SALLREPSSR LVMWDPDLLP RHTALALAAV GDAATSAVSP PAVAKNEPEE  540
VQNKEKTTLL EELSLFMEKL NDVYYDEDDG LLNDFQVDSG TLPCVACGVL GFPFMSVVQP  600
SEEALKDLSE REGEIDAQEF TTLSSEKSQC EWKTSSRYIR PRIFCLEHTI ELQRLLQSRG  660
GLKFLIICHK DFQKFKAHAA IVAEEVKVPF SYDDVLLESA SQEELSLIDL AIEDEKNYNH  720
ALDWTSELGI NLRYCVKVRK NSPTKKIQHA LSLGGLFSDT SYMLDMSTIR WLQRKSRSKV  780
KPSSTSSFTP REHLEVKVNG KLGESLDSQA GRKEEKIIQY SRKKKSNPKL SAEQGQELAP  840
LAKSKDFDKT CNKNASKSHL DSAIRSELNN EIGDSGRVIG RNEKSFSKNP CSSSFTEAHD  900
QEHPESTIKF GSALDGNVTN RFSMVNGDSA GLSSVSREHR GQSMTSNNNG SNSGSQTILV  960
STGDNHDGPG KLPGDYVCSD VSVRGVQEAV EMSDQEFGEP RSTVTNIEDE QQSQMVQPTK  1020
REAVSGDHAQ VDRAEAVCTR ENLCSDIILH TEHSSAQVGM EIPEINTASE NMVVNMTHDG  1080
EPLESSDILS SSNRDQASSN GLQVPDDGLN MESEVSSSEN TKVIETPNPM GEAKMKWKIE  1140
SESETNDNLE SSIGFIRSPC EGLRSRGKRK ATCETSFKLT ETIDEEKKPI AKRLKKTPKA  1200
RSGSRHQEVP TTTHPNRCYV EGCKMTFESK AKLQTHKRNR CTHEGCGKKF RAHKYLVLHQ  1260
RVHNDERPFE CSWEGCSMTF KWQWARTEHF RLHTGERPYK CKVEGCGLSF RFVSDYSRHR  1320
RKTGHYVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fwj_A6e-47144867390HISTONE DEMETHYLASE JARID1C
5fwj_B6e-47144867390HISTONE DEMETHYLASE JARID1C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6645000.0AY664500.1 Arabidopsis thaliana early flowering 6 (ELF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423602.10.0PREDICTED: probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLD7LXG80.0D7LXG8_ARALL; Putative uncharacterized protein
STRINGAT5G04240.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115202731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein